PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0375s0033.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 256aa    MW: 27639.6 Da    PI: 7.0021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0375s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-3070128259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+++Hnh+
  Kalax.0375s0033.1.p  70 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVVTYSSDHNHP 128
                          69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-3261130IPR003657WRKY domain
PROSITE profilePS5081132.51264130IPR003657WRKY domain
SuperFamilySSF1182902.09E-2666130IPR003657WRKY domain
SMARTSM007744.1E-3669129IPR003657WRKY domain
PfamPF031066.3E-2671128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MASVIIESGD RENSQDYSGD SLRSAADHHK AATTNSSLKK SRKALQKKVV SIPIKSLDSS  60
RSKGDSAPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS RVDPTMLVVT  120
YSSDHNHPWP PSSKPNRHAT HHSHSPHSSS PAAASPCIAP PAAATVRGTN VDETEIDRFG  180
DDFNGWFNDV MLESPVLGST DMDDAAGMLF PVMGDEEEES LFADLGELPE CSAVFRRREV  240
ITAAAAAWCG TTTTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19701311575WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875625.14e-71PREDICTED: probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP564e-69WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A103XTV24e-77A0A103XTV2_CYNCS; DNA-binding WRKY
STRINGPOPTR_0011s06990.15e-70(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-70WRKY DNA-binding protein 65